MendelVar - submit

Assembly version:

GRCh37/hg19

GRCh38/hg38

Input type:

single SNP

genomic interval

Interval generation:

use custom flanks

use LDlink fine-mapping

Left flank (bp):

Right flank (bp):

Use user-provided rsIDs?

yes

no

LD metric for LDlink finemapping:

r2

D'

LD threshold:

Extend to the nearest recombination hotspot?

yes

no

5' gene extension (bp):

3' gene extension (bp):

1000 Genomes target population:

INRICH mode:

gene

interval

Min. number of interval genes overlapping an ontology gene set (INRICH's -z option):

Min. number of genes in an ontology gene set (INRICH's -i option):

Max. number of genes in an ontology gene set (INRICH's -j option):